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Cloud systems where hospitals and researchers store and analyse genomic data securely at petabyte scale.
DNAnexus (UK Biobank RAP, Genomics England), Velsera/Seven Bridges (NCI Cancer Genomics Cloud), Terra (Broad/Verily; AnVIL), Lifebit, and the hyperscalers' genomics services host data and workflows under controlled access; trusted research environments (Genomics England, UK Biobank, NIH dbGaP, EGA, GDC) implement 'data visiting' rather than download. Interoperability standards (GA4GH Passports, DRS, WES) enable federated analysis across national resources.
Object storage plus containerised workflow engines (WDL, Nextflow, CWL) in access-controlled cloud tenancies with audit and egress controls.
Query for this technology: (TITLE:"Genomics cloud and secure research environments" OR ABSTRACT:"Genomics cloud and secure research environments") AND (cancer OR tumor OR tumour OR oncology OR carcinoma OR lymphoma OR leukemia OR leukaemia OR myeloma OR sarcoma OR melanoma OR glioma). Results are unfiltered search hits about Genomics cloud and secure research environments, not a curated reading list.
Shares Clinical NGS bioinformatics and variant interpretation and the tag supporting.
Shares Oncology EHR and real-world data platforms and the tag supporting.
Shares Oncology EHR and real-world data platforms and the tag supporting.
Shares Oncology EHR and real-world data platforms and the tag supporting.
Shares Oncology EHR and real-world data platforms and the tag supporting.
Shares Oncology EHR and real-world data platforms and the tag supporting.
Shares Oncology EHR and real-world data platforms and the tag supporting.
Shares Clinical NGS bioinformatics and variant interpretation and the tag supporting.
Open-source projects that implement or serve this technology, from OnCo's own catalogue: licence and last activity as the repository reported them on the day of the fetch. Listing is not endorsement; check the licence before reuse and the validation before clinical use.
A web platform for accessible, reproducible data analysis with thousands of tools, including full somatic variant and cancer workflows on public servers.
Overture's search and faceting layer for data portals such as ICGC ARGO.
The University of Chicago's open framework for data commons, used by the GDC and many other biomedical commons.
The Ontario Institute for Cancer Research's open genomic data platform components behind ICGC ARGO.
The web portal of ICGC ARGO, the successor to the International Cancer Genome Consortium with 100,000 patients planned.
Commercial and regulated products that serve this technology. Each card says what is behind it: a regulator's database, the literature, a public body's list, or only the company's own words. Listing is not endorsement, and a clearance is a regulatory fact, not a clinical one.
A cloud platform for running and sharing genomic pipelines under the controls a clinical or biobank setting needs.