Turns a cell's gene expression into a sentence so a normal language model can reason about it; a 27-billion-parameter version proposed a cancer immunotherapy idea that was confirmed in the lab.
Cell2Sentence, and its scaled successor C2S-Scale from Yale and Google, converts a cell into text by writing its gene names in rank order of expression, so a standard language model can be trained on cells and prompted about them in natural language. The 2025 bioRxiv preprint scaled Gemma-based models to 27B parameters on these cell sentences. Its headline result is a prediction that silmitasertib, a CK2 inhibitor, boosts antigen presentation under low interferon, which was validated in vitro, an early example of an AI-generated hypothesis confirmed in the wet lab and relevant to cancer immunotherapy. Text tokenisation is lossy because expression magnitudes are discarded, and only one hypothesis has been validated so far. For a newcomer: it turns a cell into a sentence so a chatbot can reason about biology, and one of its ideas has already checked out in the lab.
Rank-ordered gene names as text; standard LLM training and prompting.
Query for this technology: (TITLE:"Cell2Sentence / C2S-Scale" OR ABSTRACT:"Cell2Sentence / C2S-Scale" OR TITLE:"Yale, Google" OR ABSTRACT:"Yale, Google") AND (cancer OR tumor OR tumour OR oncology OR carcinoma OR lymphoma OR leukemia OR leukaemia OR myeloma OR sarcoma OR melanoma OR glioma). Results are unfiltered search hits about Cell2Sentence / C2S-Scale (Yale, Google), not a curated reading list.
Shares Virtual cell roadmap: from bulk omics to a predictive model of a cancer cell and the tags foundation-model, virtual-cell.
Shares Virtual cell roadmap: from bulk omics to a predictive model of a cancer cell and the tags foundation-model, virtual-cell.
Shares Virtual cell roadmap: from bulk omics to a predictive model of a cancer cell and the tags foundation-model, virtual-cell.
Shares Virtual cell roadmap: from bulk omics to a predictive model of a cancer cell and the tags foundation-model, virtual-cell.
Shares Virtual cell roadmap: from bulk omics to a predictive model of a cancer cell and the tags foundation-model, virtual-cell.
Shares Virtual cell roadmap: from bulk omics to a predictive model of a cancer cell and the tags foundation-model, virtual-cell.
Shares Virtual cell roadmap: from bulk omics to a predictive model of a cancer cell and the tags foundation-model, virtual-cell.
Shares Google DeepMind (and Google Research) and the tag foundation-model.
Open-source projects that implement or serve this technology, from OnCo's own catalogue: licence and last activity as the repository reported them on the day of the fetch. Listing is not endorsement; check the licence before reuse and the validation before clinical use.
Yale and Google's approach that turns single cells into text so language models can reason over them; C2S-Scale weights are released.